Welcome to PPI Origami’s documentation!

This is the documentation for PPI Origami, a programme that helps users create and validate datasets of protein-protein interactions (PPIs) with cross-validation splits suitable for training and testing PPI inference models.

Contents:

• Installation
  • Using pip
  • Cloning the repository
• Usage Guide
  • Get data into the “common” format
  • Create a strict RAPPPID dataset from the “common” format
  • Create an INTREPPPID dataset from a RAPPPID dataset
• Theory
  • References
• Download
  • Download
• Process
  • Process
• Analysis
  • Analysis

Indices and tables

• Index

• Module Index

• Search Page